prof. RNDr. Karel Berka, Ph.D.

2020

• Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges

  RAČEK Tomáš SCHINDLER Ondřej TOUŠEK Dominik HORSKÝ Vladimír BERKA Karel KOČA Jaroslav SVOBODOVÁ Radka

  Article in Periodical

  Nucleic acids research, year: 2020, volume: 48, edition: W1, DOI

• SQE charge calculation and its applicability for proteins

  SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka BERKA Karel KOČA Jaroslav

  Conference abstract

  Year: 2020, type: Conference abstract

2019

• Automated family-wide annotation of secondary structure elements

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka

  Chapter of a book

  Protein supersecondary structures: Methods and protocols, edition: Vyd. Second Edition, year: 2019, number of pages: 25 s.

• Creation and visualization of secondary structure consensus for protein families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2019, type: Appeared in Conference without Proceedings

2018

• Annotation of protein secondary structure elements for whole protein families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan NAVRÁTILOVÁ Veronika SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav BERKA Karel

  Conference abstract

  Year: 2018, type: Conference abstract

• Automated Annotation of Secondary Structure Elements for Entire Protein Families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav BERKA Karel

  Conference abstract

  Year: 2018, type: Conference abstract

• bio.tools Sum – tool for exploration of summary information about bioinformatics services in bio.tools

  RAČEK Tomáš SVOBODOVÁ VAŘEKOVÁ Radka POLANSKÝ Dan BERKA Karel KOČA Jaroslav

  Conference abstract

  Year: 2018, type: Conference abstract

• Family-wide annotation and schematic 2D visualization of secondary structure elements

  SVOBODOVÁ VAŘEKOVÁ Radka HUTAŘOVÁ VAŘEKOVÁ Ivana MIDLIK Adam HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel

  Appeared in Conference without Proceedings

  Year: 2018, type: Appeared in Conference without Proceedings

• ChannelsDB: database of biomacromolecular tunnels and pores

  PRAVDA Lukáš SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka NAVRÁTILOVÁ Veronika TOUŠEK Dominik BERKA Karel OTYEPKA Michal KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: D1, DOI

• MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

  PRAVDA Lukáš SEHNAL David TOUŠEK Dominik NAVRÁTILOVÁ Veronika BAZGIER Václav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav OTYEPKA Michal

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: W1, DOI