Stanislav Mazurenko, PhD

2025

• Anticipating protein evolution with successor sequence predictor

  KHAN Rayyan Tariq KOHOUT Pavel MUSIL Miloš ROSINSKA Monika DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  Journal of Cheminformatics, year: 2025, volume: 17, edition: 1, DOI

• Assessing the impact of His-tags on activity and stability of staphylokinase variants

  STULAJTEROVA Monika AMBRO Lubos SEDLAKOVA Dagmar NEMERGUT Michal KOHOUT Pavel MAZURENKO Stanislav VARHAC Rastislav STRUNGA Alan TOUL Martin PROKOP Zbyněk DAMBORSKÝ Jiří TOMKOVA Maria SEDLÁK Erik

  Article in Periodical

  International journal of biological macromolecules, year: 2025, volume: 328, edition: November 2025, DOI

• Engineering Dehalogenase Enzymes Using Variational Autoencoder-Generated Latent Spaces and Microfluidics

  KOHOUT Pavel VAŠINA Michal MAJEROVÁ Marika NOVÁKOVÁ Veronika DAMBORSKÝ Jiří BEDNÁŘ David MAREK Martin PROKOP Zbyněk MAZURENKO Stanislav

  Article in Periodical

  JACS AU, year: 2025, volume: 5, edition: 2, DOI

• Quantum computing for faster enzyme discovery and engineering

  DAMBORSKÝ Jiří KOUBA Petr SIVIC Josef VAŠINA Michal BEDNÁŘ David MAZURENKO Stanislav

  Article in Periodical

  Nature Catalysis, year: 2025, volume: 8, edition: 9, DOI

2024

• A computational workflow for analysis of missense mutations in precision oncology

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon AREFIEV Ihor PLANAS IGLESIAS Joan DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  JOURNAL OF CHEMINFORMATICS, year: 2024, volume: 16, edition: 1, DOI

• Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav AREFIEV Ihor RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav DAMBORSKÝ Jiří SLABÝ Ondřej BEDNÁŘ David

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 24, edition: December 2024, DOI

• BenchStab: A tool for automated querying of web-based stability predictors

  VELECKÝ Jan BEREZNÝ Matej MUSIL Miloš DAMBORSKÝ Jiří BEDNÁŘ David MAZURENKO Stanislav

  Article in Periodical

  BIOINFORMATICS, year: 2024, volume: 40, edition: 9, DOI

• Calfitter 2.0

  KUNKA Antonín LACKO Dávid DVORSKÝ Jan DAMBORSKÝ Jiří PROKOP Zbyněk MAZURENKO Stanislav

  Software

  Year: 2024

• CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules

  MARQUES Sérgio Manuel KOUBA Petr LEGRAND Anthony Thomas P SEDLAR Jiri DISSON Lucas PLANAS IGLESIAS Joan SANUSI Zainab Kemi KUNKA Antonín DAMBORSKÝ Jiří PAJDLA Tomas PROKOP Zbyněk MAZURENKO Stanislav SIVIC Josef BEDNÁŘ David

  Article in Periodical

  JACS AU, year: 2024, volume: 4, edition: 6, DOI

• DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology

  ATTAFI Omar Abdelghani CLEMENTEL Damiano KYRITSIS Konstantinos CAPRIOTTI Emidio FARRELL Gavin FRAGKOULI Styliani-Christina CASTRO Leyla Jael HATOS Andras LENAERTS Tom MAZURENKO Stanislav MOZAFFARI Soroush PRADELLI Franco RUCH Patrick SAVOJARDO Castrense TURINA Paola ZAMBELLI Federico PIOVESAN Damiano MONZON Alexander Miguel PSOMOPOULOS Fotis TOSATTO Silvio C. E.

  Article in Periodical

  GigaScience, year: 2024, volume: 13, edition: December 2024, DOI