doc. Mgr. David Bednář, Ph.D.

2022

• Fast approximative methods for study of ligand transport and rational design of improved enzymes for biotechnologies

  VÁVRA Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Biotechnology Advances, year: 2022, volume: 60, edition: November, DOI

• Follistatin-like 1 and its paralogs in heart development and cardiovascular disease

  HOŘÁK Martin FAIRWEATHER DeLisa KOKKONEN Piia Pauliina BEDNÁŘ David DOBROVOLNÁ Julie

  Article in Periodical

  Heart Failure Reviews, year: 2022, volume: 27, edition: 6, DOI

• Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web

  MUSIL Miloš JEŽÍK Andrej HAMŠÍKOVÁ Marie ŠTOURAČ Jan GALGONEK Jakub EYRILMEZ Saltuk Mustafa VONDRASEK Jiri DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2022, volume: 20, edition: November 2022, DOI

• Hidden Potential of Highly Efficient and Widely Accessible Thrombolytic Staphylokinase

  TOUL Martin MIČAN Jan SLONKOVÁ Veronika NIKITIN Dmitri MAREK Martin BEDNÁŘ David DAMBORSKÝ Jiří PROKOP Zbyněk

  Article in Periodical

  Stroke, year: 2022, volume: 53, edition: 10, DOI

• LoopGrafter: a web tool for transplanting dynamical loops for protein engineering

  PLANAS IGLESIAS Joan OPÁLENÝ Filip ULBRICH Pavol ŠTOURAČ Jan SANUSI Zainab Kemi RANGEL PAMPLONA PIZARRO PINTO José Gaspar SMITH Andrea BYŠKA Jan DAMBORSKÝ Jiří KOZLÍKOVÁ Barbora BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2022, volume: 50, edition: W1, DOI

• Mechanism-Based Design of Efficient PET Hydrolases

  WEI Ren VON HAUGWIT Gerlis PFAFF Lara MIČAN Jan BADENHORST Christoffel P. S. LIU Weidong WEBER Gert AUSTIN Harry P. BEDNÁŘ David DAMBORSKÝ Jiří BORNSCHEUER Uwe T.

  Article in Periodical

  ACS Catalysis, year: 2022, volume: 12, edition: 6, DOI

• Mechanism-Based Strategy for Optimizing HaloTag Protein Labeling

  MARQUES Sérgio Manuel SLÁNSKÁ Michaela CHMELOVÁ Klaudia CHALOUPKOVÁ Radka MAREK Martin CLARK Spencer DAMBORSKÝ Jiří KOOL Eric T. BEDNÁŘ David PROKOP Zbyněk

  Article in Periodical

  JACS AU, year: 2022, volume: 2, edition: 6, DOI

• Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase

  PFAFF Lara GAO Jian LI Zhishuai JAECKERING Anna WEBER Gert MIČAN Jan CHEN Yinping DONG Weiliang HAN Xu FEILER Christian G. AO Yu-Fei BADENHORST Christoffel P. S. BEDNÁŘ David PALM Gottfried J. LAMMERS Michael DAMBORSKÝ Jiří STRODEL Birgit LIU Weidong BORNSCHEUER Uwe T. WEI Ren

  Article in Periodical

  ACS Catalysis, year: 2022, volume: 12, edition: 15, DOI

• Nástroj LoopGrafter

  PLANAS IGLESIAS Joan OPÁLENÝ Filip ULBRICH Pavol ŠTOURAČ Jan SANUSI Zainab Kemi RANGEL PAMPLONA PIZARRO PINTO José Gaspar SCHENKMAYEROVÁ A. BYŠKA Jan DAMBORSKÝ Jiří KOZLÍKOVÁ Barbora BEDNÁŘ David

  Research and development projects

  Year: 2022, type: Research and development projects

• PDBe-KB: collaboratively defining the biological context of structural data

  VARADI Mihaly ANYANGO Stephen ARMSTRONG David BERRISFORD John CHOUDHARY Preeti DESHPANDE Mandar NADZIRIN Nurul NAIR Sreenatha S. PRAVDA Lukas TANWEER Ahsan AL-LAZIKANI Bissan ANDREINI Claudia BARTON Geoffrey J. BEDNÁŘ David BERKA Karel BLUNDELL Tom BROCK Kelly P. MARIA CARAZO Jose DAMBORSKÝ Jiří DAVID Alessia DEY Sucharita DUNBRACK Roland RECIO Fernandez Juan FRATERNALI Franca GIBSON Toby HELMER-CITTERICH Manuela HOKSZA David HOPF Thomas JAKUBEC David KANNAN Natarajan KRIVAK Radoslav KUMAR Manjeet LEVY Emmanuel D. LONDON Nir MACIAS Jose Ramon SRIVATSAN Madhusudhan M. MARKS Debora S. MARTENS Lennart MCGOWAN Stuart A. MCGREIG Jake E. MODI Vivek PARRA Gonzalo R. PEPE Gerardo PIOVESAN Damiano PRILUSKY Jaime PUTIGNANO Valeria RADUSKY Leandro G. RAMASAMY Pathmanaban RAUSCH Atilio O. REUTER Nathalie RODRIGUEZ Luis A. ROLLINS Nathan J. ROSATO Antonio SERRANO Luis SINGH Gulzar SKODA Petr SORZANO Carlos Oscar S. ŠTOURAČ Jan SULKOWSKA Joanna I. SVOBODOVÁ Radka TICHSHENKO Natalia TOSATTO Silvio C. E. VRANKEN Wim WASS Mark N. XUE Dandan ZAIDMAN Daniel THORNTON Janet STERNBERG Michael ORENGO Christine VELANKAR Sameer

  Article in Periodical

  Nucleic acids research, year: 2022, volume: 50, edition: D1, DOI